生物資源学科

生命情報科学研究室(仮称:2023年4月開設予定)

Laboratory of Bioinformatics

生命情報科学研究室
(仮称:2023年4月開設予定)

兒島孝明 准教授兒島孝明 准教授

研究内容

準備中

研究室だより

準備中準備中

研究室からのお知らせ

2022年4月に名城大学生物資源学科に着任いたしました。
次年度の研究室開設に向けて、精力的に準備を進めております。
どうか今後とも宜しくお願い致します。 兒島

最近の主な論文・著書

・Nomura, R., Tsuzuki, S., Kojima, T., Nagasawa, M.,Sato, Y., Uefune, M., Baba, Y. Hayashi, T., Nakano, H., Kato, M., and Shimizu, M. (2022) Administration of Aspergillus oryzae suppresses DSS-induced colitis. Food Chem: Mol. Sci. 4, 100063.
・Uchida, S., Kojima, T., and Sugino, T. (2022) Frequency and Clinicopathological Characteristics of Patients With KRAS/BRAF Double-Mutant Colorectal Cancer: An In Silico Study. Pathol. Oncol. Res. 28, 1610206.
・Kawai, T., Shibata, K., Akahoshi, R., Nishiuchi, S., Takahashi, H., Nakazono, M., Kojima, T., Nosaka-Takahashi, M., Sato, Y., Toyoda, A., Lucob-Agustin, N., Kano-Nakata, M., Suralta, R. R., Niones, J. M., Chen, Y., Siddique, K. H. M., Yamauchi, A., and Inukai, Y. (2021) WUSCHEL-related homeobox family genes in rice control lateral root primordium size. Proc Natl Acad Sci U S A. 119, e2101846119.
・Ishikawa, M., Kojima, T., and Hori, K. (2021) Development of a Biocontained Toluene-Degrading Bacterium for Environmental Protection. Microbiol Spectr. 9, e0025921.
・Uchida, S., Kojima, T., and Sugino, T. (2021) Clinicopathological Features, Tumor Mutational Burden, and Tumour-Infiltrating Lymphocyte Interplay in ERBB2-Mutated Breast Cancer: In Silico Analysis. Pathol. Oncol. Res. 27, 633243.
・Sun, S., Araki, Y., Hanzawa, F.,Umeki, M., Kojima, T., Nishimura, N., Ikeda, S., Mochizuki, S., and Oda, H. (2021) High sucrose diet-induced dysbiosis of gut microbiota promotes fatty liver and hyperlipidemia in rats. J. Nutr. Biochem. 93, 108621.
・Hasegawa, T., Lucob-Agustin, N., Yasufuku, K., Kojima, T., Nishiuchi, S., Ogawa, A., Takahashi-Nosaka, M., Kano-Nakata, M., Inari-Ikeda, M., Sato, M., Tsuji, H., Wainaina, M. C., Yamauchi, A., and Inukai, Y. (2021) Mutation of OUR1/OsbZIP1, which encodes a member of the basic leucine zipper transcription factor family, promotes root development in rice through repressing auxin signaling. Plant Sci. 306, 110861.
・Zhu, B., Gan, R., Cabezas, M. D., Kojima, T. Nicol, R., Jewett, M. C., and Nakano, H. (2020) Increasing cell‐free gene expression yields from linear templates in Escherichia coli and Vibrio natriegens extracts by using DNA‐binding proteins. Biotechnol. Bioeng. 117, 3849-3857.
・Kojima, T. (2020) Ultra-high-throughput analysis of functional biomolecules using in vitro selection and bioinformatics. Biosci Biotechnol Biochem 84, 1767-1774.
・Ohtsuka, H., Kato, T., Sato, T., Shimasaki, T., Kojima, T., and Aiba, H. Leucine depletion extends the lifespans of leucine-auxotrophic fission yeast by inducing Ecl1 family genes via the transcription factor Fil1. Mol. Genet. Genomics. 294, 1499–1509.
・Kojima, T., Nakane, A. Zhu, B., Alfi, A., and Nakano, H. (2019) A simple, real-time assay of horseradish peroxidase using biolayer interferometry. Biosci. Biotechnol. Biochem. 83, 1822-1828.
・Oka, H., Kojima, T., Ihara, K., Kobayashi, T., and Nakano, H. (2019) Comprehensive investigation of the gene expression system regulated by an Aspergillus oryzae transcription factor XlnR using integrated mining of gSELEX-Seq and microarray data. BMC Genomics 20, 16.
・Kojima, T., Hata, J., Oka, H., Hayashi, K., Hitomi, K., and Nakano, H. (2018) Spatial arrangement of proteins using scCro-tag: application for an in situ enzymatic microbead assay. Biosci. Biotechnol. Biochem. 82, 1911-1921.
・Zinna, R., Gotoh, H., Kojima, T., and Niimi,T. (2018) Recent advances in understanding the mechanisms of sexually dimorphic plasticity: Insights from beetle weapons and future directions. Curr. Opin. Insect. Sci. 25, 35-41.
・Kojima, T., Kunitake, E., Ihara, K., Kobayashi, T., and Nakano, H. (2016) A Robust Analytical Pipeline for Genome-Wide Identification of the Genes Regulated by a Transcription Factor: Combinatorial Analysis Performed Using gSELEX-Seq and RNA-Seq. PLoS One 11 e0159011.
・Murzabaev, M., Kojima, T., Mizoguchi, T., Kobayashi, I., DeKosky, B. J., Georgiou, G., and Nakano, H. (2016) Handmade microfluidic device for biochemical applications in emulsion. J. Biosci. Bioeng. 121, 471-476.
・Kojima, T., Mizoguchi, T., Ota, E., Hata, J., Homma, K., Zhu, B., Hitomi, K., and Nakano, H. (2016) Immobilization of proteins onto microbeads using a DNA binding tag for enzymatic assays. J. Biosci. Bioeng. 121, 147-153.
Update :

page top