Oxygen-radical pretreatment promotes cellulose degradation by cellulolytic
enzymes. Sakai K, Kojiya S, Kamijo J, Tanaka Y, Tanaka K, Maebayashi M,
Oh JS, Ito M, Hori M, Shimizu M, Kato M. Biotechnology for Biofuels. 10:290, 2017
Characterization of pH-tolerant and thermostable GH 134 β-1,4-mannanase SsGH134 possessing carbohydrate binding module 10 from Streptomyces sp. NRRL B-24484. Sakai K, Kimoto S, Shinzawa Y, Minezawa M, Suzuki K, Jindou S, Kato M, Shimizu M. Journal of Bioscience and Bioengineering. in press, 2017
Sirtuin A regulates secondary metabolite production by Aspergillus nidulans.
Itoh E, Shigemoto R, Oinuma, K, Shimizu M, Masuo S, Takaya N. J. Gen. Appl. Microbiol. 63(4):228-23, 2017
Biochemical characterization of thermostable β-1,4-mannanase belonging
to the glycoside hydrolase family 134 from Aspergillus oryzae. Sakai K,
Mochizuki M, Yamada M, Shinzawa Y, Minezawa M, Kimoto S, Murata S, Kaneko
Y, Ishihara S, JindouS, Kobayashi T, Kato M, Shimizu M. Appl. Microbiol. Biotechnol. 101(8):3237-3245, 2017
2016年
Sakai K, Mochizuki M, Yamada M, Shinzawa Y, Minezawa M, Kimoto S, Murata
S, Kaneko Y, Ishihara S, JindouS, Kobayashi T, Kato M, Shimizu M. Biochemical
characterization of thermostable β-1,4-mannanase belonging to the
glycoside hydrolase family 134 from Aspergillus oryzae. Appl. Microbiol. Biotechnol. 2016; in press.
Itoh E, Shigemoto R, Oinuma, K, Shimizu M, Masuo S, Takaya N. Sirtuin A
regulates secondary metabolite production by Aspergillus nidulans. J. Gen. Appl. Microbiol. 2016; in press.
Shimizu M, Masuo S, Itoh E, Zhou S, Kato M, Takaya N. Thiamine synthesis
regulates the fermentation mechanisms in the fungus Aspergillus nidulans. Biosci. Biotechnol. Biochem. 2016;80, 1768-1775.
Li N, Kunitake E, Endo Y, Aoyama M, Kanamaru K, Kimura M, Kato M, Kobayashi
T. Involvement of an SRF-MADS protein McmA in regulation of extracellular
enzyme production and asexual/sexual development in Aspergillus nidulans. Biosci. Biotechnol. Biochem. 2016;80, 1820-1828.
2015年
Shimizu M, Yamamoto T, Okabe N, Sakai K, Koide E, Miyachi Y, Kurimoto M, Mochizuki M, Yoshino-Yasuda S, Mitsui S, Ito A, Murano H, Takaya N, Kato M. Novel 4-methyl-2-oxopentanoate reductase involved in synthesis of the Japanese sake flavor, ethyl leucate. Appl. Microbiol. Biotechnol. 2015;100(7):3137-45.
Shimizu M, Kaneko Y, Ishihara S, Mochizuki M, Sakai K, Yamada M, Murata S, Itoh E, Yamamoto T, Sugimura Y, Hirano T, Takaya N, Kobayashi T, Kato M. Novel β-1,4-mannanase belonging to a new glycoside hydrolase family in Aspergillus nidulans. J. Biol. Chem. 2015;290, 27914-27927.
Muraguchi H, Umezawa K, Niikura M, Yoshida M, Kozaki T, Ishii K, Sakai
K, Shimizu M, Nakahori K, Sakamoto Y, Choi C, Ngan CY, Lindquist E, Lipzen
A, Tritt A, Haridas S, Barry K, Grigoriev IV, Pukkila PJ. Strand-Specific
RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea. PLoS ONE. 2015;DOI:10.1371/journal.pone.0141586.
Hortschansky P, Ando E, Tuppatsch K, Arikawa H, Kobayashi T, Kato M, Haas
H, Brakhage AA. Deciphering the combinatorial DNA-binding code of the CCAAT-binding
complex and the iron-regulatory basic region leucine zipper (bZIP) transcription
factor HapX. J. Biol. Chem. 2015;290(10):6058-70.
2014年
Siriwan W, Roytrakul S, Shimizu M, Takaya N, Chowpongpang S. Proteomics
of papaya ringspot virus-infected papaya leaves. Kasetsart J. 2014;47:589-602.
Hayashi S, Yoshioka M, Matsui T, Kojima K, Kato M, Kanamaru K, Kobayashi
T. Control of reactive oxygen species (ROS) production through histidine
kinases in Aspergillus nidulans under different growth conditions. FEBS Open Bio. 2014;4:90-5.
Gsaller F, Hortschansky P, Beattie SR, Klammer V, Tuppatsch K, Lechner BE, Rietzschel N, Werner ER, Vogan AA, Chung D, Mühlenhoff U, Kato M, Cramer RA, Brakhage AA, Haas H. The Janus transcription factor HapX controls fungal adaptation to both iron starvation and iron excess. EMBO J. 2014;33(19):2261-76.
Doi Y, Shimizu M, Fujita T, Nakamura A, Takizawa N, Takaya N. Achromobacter
denitrificans strain YD35 pyruvate dehydrogenase controls NADH production
to allow tolerance to extremely high nitrite levels. Appl. Environ. Microbiol. 2014;80(6):1910-8.
2013年
Zhou S, Narukami T, Masuo S, Shimizu M, Fujita T, Doi Y, Kamimura Y, Takaya N. NO-inducible nitrosothionein mediates NO removal in tandem with thioredoxin. Nat. Chem. Biol. 2013;9(10):657-63.
Yoshino-Yasuda S, Fujino E, Matsui J, Ono N, Kato M, Kitamoto N. Molecular Analysis of AsamyR Gene Encoding Transcriptional Factor for Amylolytic Gene from Shoyu Koji Mold, Aspergillus sojae KBN1340. Food Sci. Technol. Res. 2013;19(3):505-11.
Yoshino-Yasuda S, Fujino E, Matsui J, Kato M, Kitamoto N. Molecular Analysis
of the α-Amylase Gene, AstaaG1, from Shoyu Koji Mold, Aspergillus sojae KBN1340. Food Sci. Technol. Res. 2013;19(2):255-61.
Yamakawa Y, Endo Y, Li N, Yoshizawa M, Aoyama M, Watanabe A, Kanamaru K,
Kato M, Kobayashi T. Regulation of cellulolytic genes by McmA, the SRF-MADS
box protein in Aspergillus nidulans. Biochem. Biophys. Res. Commun. 2013;431(4):777-82.
Tanaka A, Cartwright GM, Saikia S, Kayano Y, Takemoto D, Kato M, Tsuge T, Scott B. ProA, a transcriptional regulator of fungal fruiting body development, regulates leaf hyphal network development in the Epichloë festucae-Lolium perenne symbiosis. Mol. Microbiol. 2013;90(3):551-68.
Shimizu M*, Takaya N. Nudix hydrolase controls nucleotides and glycolytic
mechanisms in hypoxic Aspergillus nidulans. Biosci Biotechnol Biochem. 2013;77(9):1888-93. *corresponding author
Shimasaki Y, Tsuyama M, Tasmin R, Qiu X, Shimizu M, Sato Y, Yamasaki Y,
Kato-Unoki Y, Nukata A, Nakashima T, Ichinose H, Wariishi H, Honjo T, Oshima
Y. Thiobencarb herbicide reduces growth, photosynthetic activity, and amount
of Rieske iron-sulfur protein in the diatom Thalassiosira pseudonana. J. Biochem. Mol. Toxicol. 2013;27(9):437-44.
Qiu X, Shimasaki Y, Tsuyama M, Yamada T, Kuwahara R, Kawaguchi M, Honda M, Gunjikake H, Tasmin R, Shimizu M, Sato Y, Kato-Unoki Y, Nakashima T, Matsubara T, Yamasaki Y, Ichinose H, Wariishi H, Honjo T, Oshima Y. Growth-phase dependent variation in photosynthetic activity and cellular
protein expression profile in the harmful raphidophyte Chattonella antiqua.
Biosci Biotechnol Biochem. 2013;77(1):46-52.
2012年
Yoshino-Yasuda S, Karita S, Kato M, Kitamoto N. Sequence Analysis and Heterologous
Expression of Rhamnogalacturonan Lyase A Gene (AsrglA) from Shoyu Koji Mold, Aspergillus sojae KBN1340. Food Sci. Technol. Res. 2012;18(6):901-9.
Terabayashi Y, Shimizu M, Kitazume T, Masuo S, Fujii T, Takaya N. Conserved and specific responses to hypoxia in Aspergillus oryzae and Aspergillus nidulans determined by comparative transcriptomics. Appl. Microbiol. Biotechnol. 2012;93(1):305-17.
Yoshino-Yasuda S, Hasegawa O, Iga Y, Shiraishi Y, Wagu Y, Suzuki T, Sugimoto T, Ken-Ichi K, Kato M, Kitamoto N. Disruption and Overexpression of Acid Phosphatase Gene (aphA) from a Miso Koji Mold, Aspergillus oryzae KBN630, and Characterization of the Gene Product. Food Sci. Technol. Res. 2012;18(1):59-65.
Shimizu M, Masuo S, Fujita T, Doi Y, Kamimura Y, Takaya N. Hydrolase controls
cellular NAD, sirtuin, and secondary metabolites. Mol. Cell. Biol. 2012;32(18):3743-55.
Murakoshi Y, Makita T, Kato M, Kobayashi T. Comparison and characterization of α-amylase inducers in Aspergillus nidulans based on nuclear localization of AmyR. Appl. Microbiol. Biotechnol. 2012;94(6):1629-35.
2011年
Tashiro Y, Inagaki A, Shimizu M, Ichikawa S, Takaya N, Nakajima-Kambe T,
Uchiyama H, Nomura N. Characterization of phospholipids in membrane vesicles
derived from Pseudomonas aeruginosa. Biosci Biotechnol Biochem. 2011;75(3):605-7.
Yoshino-Yasuda S, Mori A, Ishihara N, Hasegawa O, Kato M, Kitamoto N. Development
of a Highly Efficient Gene Replacement System for an Industrial Strain
of Aspergillus oryzae Used in the Production of Miso, a Japanese Fermented Soybean Paste. Food Sci. Technol. Res. 2011;17(2):161-6.
Yoshino-Yasuda S, Kato M, Kitamoto N. Sequence Analysis and Heterologous
Expression of Polygalacturonase Gene (AspecA) from a Shoyu Koji Mold, Aspergillus sojae KBN1340. Food Sci. Technol. Res. 2011;17(6):579-84.
Sato I, Shimatani K, Fujita K, Abe T, Shimizu M, Fujii T, Hoshino T, Takaya N. Glutathione
reductase /glutathione is responsible for cytotoxic elemental sulfur tolerance
via polysulfide shuttle in fungi. J. Biol. Chem. 2011;286(23):20283-91.
Noguchi Y, Tanaka H, Kanamaru K, Kato M, Kobayashi T. Xylose triggers reversible
phosphorylation of XlnR, the fungal transcriptional activator of xylanolytic
and cellulolytic genes in Aspergillus oryzae. Biosci Biotechnol Biochem. 2011;75(5):953-9.
Fujii T, Shimizu M, Doi Y, Fujita T, Ito T, Miura D, Wariishi H, Takaya N. Novel fungal phenylpyruvate reductase belongs to d-isomer-specific 2-hydroxyacid dehydrogenase family. Biochim. Biophys. Acta. 2011;1814(12):1669-76.
2010年
Tashiro Y, Ichikawa S, Shimizu M, Toyofuku M, Takaya N, Nakajima-Kambe
T, Uchiyama H, Nomura N. Variation of physiochemical properties and cell
association activity of membrane vesicles with growth phase in Pseudomonas aeruginosa. Appl. Environ. Microbiol. 2010;76(11):3732-9.
Shimizu M, Fujii T, Masuo S, Takaya N. Mechanism of de novo branched-chain
amino acid synthesis as an alternative electron sink in hypoxic Aspergillus nidulans cells. Appl. Environ. Microbiol. 2010;76(5):1507-15.
Matsushita Y, Yamauchi K, Takabe K, Awano T, Yoshinaga A, Kato M, Kobayashi
T, Asada T, Furujyo A, Fukushima K. Enzymatic saccharification of Eucalyptus bark using hydrothermal pre-treatment with carbon dioxide. Bioresour. Technol. 2010;101(13):4936-9.
Masuo S, Terabayashi Y, Shimizu M, Fujii T, Kitazume T, Takaya N. Global gene expression analysis of Aspergillus nidulans reveals metabolic shift and transcription suppression under hypoxia. Mol. Genet. Genomics. 2010;284(6):415-24.
Kojima T, Hashimoto Y, Kato M, Kobayashi T, Nakano H. High-throughput screening of DNA binding sites for transcription factor AmyR from Aspergillus nidulans using DNA beads display system. J. Biosci. Bioeng. 2010;109(6):519-25. 2011年度生物工学論文賞
2009年
Wortman JR, Gilsenan JM, Joardar V, Deegan J, Clutterbuck J, Andersen MR,
Archer D, Bencina M, Braus G, Coutinho P, von Döhren H, Doonan J, Driessen
AJ, Durek P, Espeso E, Fekete E, Flipphi M, Estrada CG, Geysens S, Goldman
G, de Groot PW, Hansen K, Harris SD, Heinekamp T, Helmstaedt K, Henrissat
B, Hofmann G, Homan T, Horio T, Horiuchi H, James S, Jones M, Karaffa L,
Karanyi Z, Kato M, Keller N, Kelly DE, Kiel JA, Kim JM, van der Klei IJ,
Klis FM, Kovalchuk A, Krasevec N, Kubicek CP, Liu B, Maccabe A, Meyer V,
Mirabito P, Miskei M, Mos M, Mullins J, Nelson DR, Nielsen J, Oakley BR,
Osmani SA, Pakula T, Paszewski A, Paulsen I, Pilsyk S, Pócsi I, Punt PJ,
Ram AF, Ren Q, Robellet X, Robson G, Seiboth B, van Solingen P, Specht
T, Sun J, Taheri-Talesh N, Takeshita N, Ussery D, vanKuyk PA, Visser H,
van de Vondervoort PJ, de Vries RP, Walton J, Xiang X, Xiong Y, Zeng AP,
Brandt BW, Cornell MJ, van den Hondel CA, Visser J, Oliver SG, Turner G.
The 2008 update of the Aspergillus nidulans genome annotation: a community effort. Fungal Genet. Biol. 2009;46 Suppl 1:S2-13.
Shimizu M, Fujii T, Masuo S, Fujita K, Takaya N. Proteomic analysis of Aspergillus nidulans cultured under hypoxic conditions. Proteomics. 2009;9(1):7-19.
Sato Y, Shimizu M, Mizunoya W, Wariishi H, Tatsumi R, Buchman VL, Ikeuchi Y.
Differential expression of sarcoplasmic and myofibrillar proteins of rat
soleus muscle during denervation atrophy. Biosci Biotechnol Biochem. 2009;73(8):1748-56. 2009年度BBB論文賞
Sato I, Shimizu M, Hoshino T, Takaya N. The glutathione system of Aspergillus nidulans involves a fungus-specific glutathione S-transferase. J. Biol. Chem. 2009;284(12):8042-53.
Noguchi Y, Sano M, Kanamaru K, Ko T, Takeuchi M, Kato M, Kobayashi T. Genes regulated by AoXlnR, the xylanolytic and cellulolytic transcriptional regulator, in Aspergillus oryzae. Appl. Microbiol. Biotechnol. 2009;85(1):141-54.
Furukawa T, Shida Y, Kitagami N, Mori K, Kato M, Kobayashi T, Okada H,
Ogasawara W, Morikawa Y. Identification of specific binding sites for XYR1,
a transcriptional activator of cellulolytic and xylanolytic genes in Trichoderma reesei. Fungal Genet. Biol. 2009;46(8):564-74.
2008年
Suzuki A, Kanamaru K, Azuma N, Kato M, Kobayashi T. GFP-tagged expression analysis revealed that some histidine kinases of Aspergillus nidulans show temporally and spatially different expression during the life cycle. Biosci Biotechnol Biochem. 2008;72(2):428-34.
Shida Y, Furukawa T, Ogasawara W, Kato M, Kobayashi T, Okada H, Morikawa
Y. Functional analysis of the egl3 upstream region in filamentous fungus
Trichoderma reesei. Appl. Microbiol. Biotechnol. 2008;78(3):515-24.
Matsuzaki F, Shimizu M, Wariishi H. Proteomic and metabolomic analyses
of the white-rot fungus Phanerochaete chrysosporium exposed to exogenous benzoic acid. J Proteome Res. 2008;7(6):2342-50.
Furukawa T, Shida Y, Kitagami N, Ota Y, Adachi M, Nakagawa S, Shimada R,
Kato M, Kobayashi T, Okada H, Ogasawara W, Morikawa Y. Identification of
the cis-acting elements involved in regulation of xylanase III gene expression
in Trichoderma reesei PC-3-7. Fungal Genet. Biol. 2008;45(7):1094-102.
Endo Y, Yokoyama M, Morimoto M, Shirai K, Chikamatsu G, Kato N, Tsukagoshi
N, Kato M, Kobayashi T. Novel promoter sequence required for inductive
expression of the Aspergillus nidulans endoglucanase gene eglA. Biosci Biotechnol Biochem. 2008;72(2):312-20.
Sasaki S, Shimizu M, Wariishi H, Tsutsumi Y, Kondo R. Transcriptional and
translational analyses of poplar anionic peroxidase isoenzymes. J. Wood Sci. 2007;53(5):427-35.
Kobayashi T, Abe K, Asai K, Gomi K, Juvvadi PR, Kato M, Kitamoto K, Takeuchi M, Machida M. Genomics of Aspergillus oryzae. Biosci Biotechnol Biochem. 2007;71(3):646-70.
Hortschansky P, Eisendle M, Al-Abdallah Q, Schmidt AD, Bergmann S, Thön M, Kniemeyer O, Abt B, Seeber B, Werner ER, Kato M, Brakhage AA, Haas H. Interaction of HapX with the CCAAT-binding complex--a novel mechanism of gene regulation by iron. EMBO J. 2007;26(13):3157-68.
Hagiwara D, Matsubayashi Y, Marui J, Furukawa K, Yamashino T, Kanamaru
K, Kato M, Abe K, Kobayashi T, Mizuno T. Characterization of the NikA histidine
kinase implicated in the phosphorelay signal transduction of Aspergillus nidulans, with special reference to fungicide responses. Biosci Biotechnol Biochem. 2007;71(3):844-7.
Hagiwara D, Asano Y, Marui J, Furukawa K, Kanamaru K, Kato M, Abe K, Kobayashi
T, Yamashino T, Mizuno T. The SskA and SrrA response regulators are implicated
in oxidative stress responses of hyphae and asexual spores in the phosphorelay
signaling network of Aspergillus nidulans. Biosci Biotechnol Biochem. 2007;71(4):1003-14.
Azuma N, Kanamaru K, Matsushika A, Yamashino T, Mizuno T, Kato M, Kobayashi T. In vitro analysis of His-Asp phosphorelays in Aspergillus nidulans: the first direct biochemical evidence for the existence of His-Asp phosphotransfer systems in filamentous fungi. Biosci Biotechnol Biochem. 2007;71(10):2493-502. 2007年度BBB論文賞
2006年
Tanoue S, Kamei K, Goda H, Tanaka A, Kobayashi T, Tsukagoshi N, Kato M.
The region in a subunit of the Aspergillus CCAAT-binding protein similar to the HAP4p-recruiting domain of Saccharomyces cerevisiae Hap5p is not essential for transcriptional enhancement. Biosci Biotechnol Biochem. 2006;70(4):782-7.
Sasaki S, Shimizu M, Wariishi H, Tsutsumi Y, Kondo R. Proteome analysis
of popular peroxidase isozymes. Plant Cell Physiol. 2006;47:140-1.
2005年
Shimizu M, Yuda N, Nakamura T, Tanaka H, Wariishi H. Metabolic regulation
at the tricarboxylic acid and glyoxylate cycles of the lignin-degrading
basidiomycete Phanerochaete chrysosporium against exogenous addition of vanillin. Proteomics. 2005;5(15):3919-31.
Shimizu M, Wariishi H. Development of a sample preparation method for fungal
proteomics. FEMS Microbiol. Lett. 2005;247(1):17-22.
Shimizu M, Kobayashi Y, Tanaka H, Wariishi H. Transportation mechanism
for vanillin uptake through fungal plasma membrane. Appl. Microbiol. Biotechnol. 2005;68(5):673-9.
Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G, Kusumoto K, Arima T, Akita O, Kashiwagi Y, Abe K, Gomi K, Horiuchi H, Kitamoto K, Kobayashi T, Takeuchi M, Denning DW, Galagan JE, Nierman WC, Yu J, Archer DB, Bennett JW, Bhatnagar D, Cleveland TE, Fedorova ND, Gotoh O, Horikawa H, Hosoyama A, Ichinomiya M, Igarashi R, Iwashita K, Juvvadi PR, Kato M, Kato Y, Kin T, Kokubun A, Maeda H, Maeyama N, Maruyama J, Nagasaki H, Nakajima T, Oda K, Okada K, Paulsen I, Sakamoto K, Sawano T, Takahashi M, Takase K, Terabayashi Y, Wortman JR, Yamada O, Yamagata Y, Anazawa H, Hata Y, Koide Y, Komori T, Koyama Y, Minetoki T, Suharnan S, Tanaka A, Isono K, Kuhara S, Ogasawara N, Kikuchi H. Genome sequencing and analysis of Aspergillus oryzae. Nature. 2005;438(7071):1157-61.
Kato M. An overview of the CCAAT-box binding factor in filamentous fungi:
assembly, nuclear translocation, and transcriptional enhancement. Biosci Biotechnol Biochem. 2005;69(4):663-72. 農芸化学奨励賞受賞総説
Goda H, Nagase T, Tanoue S, Sugiyama J, Steidl S, Tuncher A, Kobayashi
T, Tsukagoshi N, Brakhage AA, Kato M. Nuclear translocation of the heterotrimeric
CCAAT binding factor of Aspergillus oryzae is dependent on two redundant localising signals in a single subunit.
Arch. Microbiol. 2005;184(2):93-100.
2004年
Kato Y, Nakao M, Shimizu M, Wariishi H, Yano T. Purification and functional
assessment of C3a, C4a and C5a of the common carp (Cyprinus carpio) complement. Dev. Comp. Immunol. 2004;28(9):901-10.
Steidl S, Tuncher A, Goda H, Guder C, Papadopoulou N, Kobayashi T, Tsukagoshi
N, Kato M, Brakhage AA. A single subunit of a heterotrimeric CCAAT-binding
complex carries a nuclear localization signal: piggy back transport of
the pre-assembled complex to the nucleus. J. Mol. Biol. 2004;342(2):515-24.